PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG309800.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 341aa    MW: 35592.2 Da    PI: 8.9466
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG309800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.75e-09174221455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++iN ++e L+el+P +s    k    a +L + +++++sLq
  Pavir.4KG309800.2.p 174 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 221
                          8*************************94....22445556666666666655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-15168239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-9168225No hitNo description
PROSITE profilePS5088814.627170220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-14170238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6174221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-8176226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MRRPSPPPQE LPAAGAEIQA ALIPAAAGQA SSAPPAAAGT RGGGGGSFTA LLGLPTSQAM  60
ELLLPRAAAP APAPSPAPAP ALAPTFPSDP HLVDRAARFS AFASPSPSSP SPTPPPAPPA  120
AAAKRKADPA DRASKGKAAR KGKTAEEKPA GGDGEDDKPA YVHVRARRGQ ATDSHSLAER  180
ARREKINARM ELLKELVPGC SKVSGTALVL DEIINHVQSL QRQVEYLSMR LAAVNPRVDF  240
GGLDSFLTTE CGRIAGLNCK NGIDLEQVTW PEMGVHGARH LLQLQQQFWH GDLAHQHQAV  300
SQWEKRGDEN PPVFSSSSPS LFGYDLTSSG KIACNPITPF *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.187730.0callus| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0407290.0BT040729.1 Zea mays full-length cDNA clone ZM_BFc0120O20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008658256.11e-167PREDICTED: uncharacterized protein LOC100273300 isoform X1
SwissprotQ8VZ023e-65BH048_ARATH; Transcription factor bHLH48
TrEMBLK7VJ891e-171K7VJ89_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM2G378653_P021e-170(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42300.12e-50bHLH family protein